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C
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D
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E
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F
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G
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H
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I
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L
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M
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N
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P
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R
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S
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T
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U
C
calc_contiguous_spl() (nabo.Graph method)
calc_diff_potential() (nabo.Graph method)
calc_dist() (nabo.Mapping method)
calc_modularity() (nabo.Graph method)
calc_snn() (nabo.Mapping method)
classify_target() (nabo.Graph method)
correct_var() (nabo.Dataset method)
D
Dataset (class in nabo)
dump_hvgs() (nabo.Dataset method)
E
export_as_dataframe() (nabo.Dataset method)
F
filter_data() (nabo.Dataset method)
find_cluster_markers() (in module nabo)
find_hvgs() (nabo.Dataset method)
fit_ipca() (nabo.Dataset method)
G
get_cell_lib() (nabo.Dataset method)
get_cells_from_clusters() (nabo.Graph method)
get_cluster_identity_weights() (nabo.Graph method)
get_cum_exp() (nabo.Dataset method)
get_gene_abundance() (nabo.Dataset method)
get_genes_by_pattern() (nabo.Dataset method)
get_genes_per_cell() (nabo.Dataset method)
get_k_path_neighbours() (nabo.Graph method)
get_lvgs() (nabo.Dataset method)
get_mapped_cells() (nabo.Graph method)
get_mapping_score() (nabo.Graph method)
get_mapping_specificity() (nabo.Graph method)
get_norm_exp() (nabo.Dataset method)
get_random_nodes() (nabo.Graph method)
get_ref_specificity() (nabo.Graph method)
get_scaled_values() (nabo.Dataset method)
get_scaling_params() (nabo.Dataset method)
get_score_percentile() (nabo.Graph static method)
get_total_exp_per_cell() (nabo.Dataset method)
GML format
Graph (class in nabo)
Graph modularity
GraphPlot (class in nabo)
H
HDF5
HDF5 group
HVGs
I
import_clusters() (nabo.Graph method)
import_clusters_from_csv() (nabo.Graph method)
import_clusters_from_json() (nabo.Graph method)
import_layout() (nabo.Graph method)
import_layout_from_csv() (nabo.Graph method)
import_layout_from_json() (nabo.Graph method)
L
layout (nabo.Graph attribute)
load_from_gml() (nabo.Graph method)
load_from_h5() (nabo.Graph method)
M
make_clusters() (nabo.Graph method)
make_leiden_clusters() (nabo.Graph method)
make_ref_graph() (nabo.Mapping method)
map_target() (nabo.Mapping method)
Mapping (class in nabo)
Mapping score
N
Non zero mean
Notebook
P
plot_filtered() (nabo.Dataset method)
plot_raw() (nabo.Dataset method)
R
Reference cells
remove_cells() (nabo.Dataset method)
remove_genes() (nabo.Dataset method)
run_de_test() (in module nabo)
S
save_clusters_as_csv() (nabo.Graph method)
save_clusters_as_json() (nabo.Graph method)
save_graph() (nabo.Graph method)
save_layout_as_csv() (nabo.Graph method)
save_layout_as_json() (nabo.Graph method)
set_de_groups() (nabo.Graph method)
set_gene_stats() (nabo.Dataset method)
set_parameters() (nabo.Mapping method)
set_ref_layout() (nabo.Graph method)
set_sf() (nabo.Dataset method)
SNN graph
T
Target cells
transform_pca() (nabo.Dataset method)
U
update_exp_suffix() (nabo.Dataset method)
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